Publications

MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets.Kovalchik KA, Ma Q, Wessling L, Saab F, D Duquette J, Kubiniok P, Hamelin DJ, Faridi P, Li C, Purcell AW, Jang A, Paramithiotis E, Tognetti M, Reiter L, Bruderer R, Lanoix J, Bonneil E, Courcelles M, Thibault P, Caron E, Sirois IMol Cell Proteomics 2021-11-17;21(1):100178.

CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation.Daouda T, Dumont-Lagacé M, Feghaly A, Benslimane Y, Panes R, Courcelles M, Benhammadi M, Harrington L, Thibault P, Major F, Bengio Y, Gagnon E, Lemieux S, Perreault CPLoS Comput Biol 2021-10-22;17(10):e1009482.

Early defects in mucopolysaccharidosis type IIIC disrupt excitatory synaptic transmission.Pará C, Bose P, Bruno L, Freemantle E, Taherzadeh M, Pan X, Han C, McPherson PS, Lacaille JC, Bonneil E, Thibault P, O'Leary C, Bigger B, Morales CR, Di Cristo G, Pshezhetsky AVJCI Insight 2021-08-09;6(15).

Proteomic strategies for characterizing ubiquitin-like modificationsChongyang Li, Trent G. Nelson, Alfred C. O. Vertegaal & Pierre Thibault  2021-07-29;1(53).

Integration of Segmented Ion Fractionation and Differential Ion Mobility on a Q-Exactive Hybrid Quadrupole Orbitrap Mass Spectrometer.Pfammatter S, Wu Z, Bonneil E, Bailey DJ, Prasad S, Belford M, Rochon J, Picard P, Lacoursière J, Dunyach JJ, Thibault PAnal Chem 2021-07-20;93(28):9817-9825.

A bacterium-derived, cancer-associated immunopeptidome.Perreault C, Thibault P, Kroemer GOncoimmunology 2021-05-03;10(1):1918373.

Crosstalk Between SUMO and Ubiquitin-Like Proteins: Implication for Antiviral Defense.Chelbi-Alix MK, Thibault PFront Cell Dev Biol 2021-04-21;9:671067.

Atypical acute myeloid leukemia-specific transcripts generate shared and immunogenic MHC class-I-associated epitopes.Ehx G, Larouche JD, Durette C, Laverdure JP, Hesnard L, Vincent K, Hardy MP, Thériault C, Rulleau C, Lanoix J, Bonneil E, Feghaly A, Apavaloaei A, Noronha N, Laumont CM, Delisle JS, Vago L, Hébert J, Sauvageau G, Lemieux S, Thibault P, Perreault CImmunity 2021-04-13;54(4):737-752.e10.

SUMOylation- and GAR1-Dependent Regulation of Dyskerin Nuclear and Subnuclear Localization.MacNeil DE, Lambert-Lanteigne P, Qin J, McManus FP, Bonneil E, Thibault P, Autexier CMol Cell Biol 2021-03-24;41(4).

Most non-canonical proteins uniquely populate the proteome or immunopeptidome.Ruiz Cuevas MV, Hardy MP, Hollý J, Bonneil E, Durette C, Courcelles M, Lanoix J, Côté C, Staudt LM, Lemieux S, Thibault P, Perreault C, Yewdell JWCell Rep 2021-03-09;34(10):108815.

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