Publications

CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation.Daouda T, Dumont-Lagacé M, Feghaly A, Benslimane Y, Panes R, Courcelles M, Benhammadi M, Harrington L, Thibault P, Major F, Bengio Y, Gagnon E, Lemieux S, Perreault CPLoS Comput Biol 2021-10-22;17(10):e1009482.

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers.Miao Z, Adamiak RW, Antczak M, Boniecki MJ, Bujnicki J, Chen SJ, Cheng CY, Cheng Y, Chou FC, Das R, Dokholyan NV, Ding F, Geniesse C, Jiang Y, Joshi A, Krokhotin A, Magnus M, Mailhot O, Major F, Mann TH, Piątkowski P, Pluta R, Popenda M, Sarzynska J, Sun L, Szachniuk M, Tian S, Wang J, Wang J, Watkins AM, Wiedemann J, Xiao Y, Xu X, Yesselman JD, Zhang D, Zhang Y, Zhang Z, Zhao C, Zhao P, Zhou Y, Zok T, Żyła A, Ren A, Batey RT, Golden BL, Huang L, Lilley DM, Liu Y, Patel DJ, Westhof ERNA 2020-08-01;26(8):982-995.

From transient recognition to efficient silencing: a RISCky business.Major FNat. Struct. Mol. Biol. 2020-06-01;27(6):519-520.

A transcriptome-based approach to identify functional modules within and across primary human immune cells.Mola S, Foisy S, Boucher G, Major F, Beauchamp C, Karaky M, Goyette P, Lesage S, Rioux JDPLoS ONE 2020-01-01;15(5):e0233543.

Apoptotic endothelial cells release small extracellular vesicles loaded with immunostimulatory viral-like RNAs.Hardy MP, Audemard É, Migneault F, Feghaly A, Brochu S, Gendron P, Boilard É, Major F, Dieudé M, Hébert MJ, Perreault CSci Rep 2019-05-10;9(1):7203.

The sequence features that define efficient and specific hAGO2-dependent miRNA silencing guides.Yan Y, Acevedo M, Mignacca L, Desjardins P, Scott N, Imane R, Quenneville J, Robitaille J, Feghaly A, Gagnon E, Ferbeyre G, Major FNucleic Acids Res. 2018-09-19;46(16):8181-8196.

RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data.Yao J, Reinharz V, Major F, Waldispühl JNucleic Acids Res. 2017-07-03;45(W1):W440-W444.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.Miao Z, Adamiak RW, Antczak M, Batey RT, Becka AJ, Biesiada M, Boniecki MJ, Bujnicki JM, Chen SJ, Cheng CY, Chou FC, Ferré-D'Amaré AR, Das R, Dawson WK, Ding F, Dokholyan NV, Dunin-Horkawicz S, Geniesse C, Kappel K, Kladwang W, Krokhotin A, Łach GE, Major F, Mann TH, Magnus M, Pachulska-Wieczorek K, Patel DJ, Piccirilli JA, Popenda M, Purzycka KJ, Ren A, Rice GM, Santalucia J, Sarzynska J, Szachniuk M, Tandon A, Trausch JJ, Tian S, Wang J, Weeks KM, Williams B, Xiao Y, Xu X, Zhang D, Zok T, Westhof ERNA 2017-05-01;23(5):655-672.

Structural dynamics control the MicroRNA maturation pathway.Dallaire P, Tan H, Szulwach K, Ma C, Jin P, Major FNucleic Acids Res. 2016-11-16;44(20):9956-9964.

Exploring Alternative RNA Structure Sets Using MC-Flashfold and db2cm.Dallaire P, Major FMethods Mol. Biol. 2016-09-25;1490:237-51.

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